Build a solid foundation in HIV science (50 questions): This section uses clinical scenarios and feedback-driven questions to help you understand HIV virology, the replication cycle and how the virus progresses from initial to chronic infection. You’ll also review the stages of HIV and how they link to clinical signs, symptoms and decision-making in patient care.
đź““Â HIV FUNDAMENTALS
HIV is a retroviral disease (RVD) that is usually transmitted vertically (from mother to child) or horizontally (between individuals) via bodily fluids of an infected person in the absence of adequate pre (PrEP) or post-exposure prophylaxis (PEP); see Table 1 for risk probability Transmission can occur, although rarely, with PreP or PEP.
HIV-1 is the most common type, whilst HIV-2 is less common and less infectious.1 South Africa (RSA) has one of the highest prevalence of HIV in the world. RSA has invested in HIV programs and has made good progress towards the UNAIDS 95-95-95 targets (95% of the population being aware of their status, of which 95% with HIV should be on treatment, of which 95% are virally suppressed).
Vulnerable groups at risk
- Women, particularly young women and adolescent girls with low socio-economic status (SES), are at risk. Gender-based violence (GBV) is also considered a contributing factor.
- Sex workers: Contributing factors may include the criminalisation of sex work, as this discourages the reporting of rape or assault.Â
- Men who have sex with men (MSM)
- Intravenous drug users1
- Children and orphansÂ
Risk factors
The aforementioned vulnerable groups, unprotected sexual intercourse, multiple sexual partners, previous or current STI, sharing of IV equipment, mucosal contact with infected bodily fluids, needle stick injuries, and maternal HIV infection.
Pathophysiology:
See Figure 1 and 2 below Â
HIV pathophysiology
- Viral cell entry: Gp120 on HIV attaches to CD4r and CCR5 (on MΦ) and CD4r and CXCR4 (on T-cells) to enter the cell’s cytoplasm via endocytosis.
- Viral DNA production: Reverse transcriptase (RT) uses viral RNA to make a strand of viral DNA and its complementary DNA strandÂ
- Viral DNA integration: Viral DNA integrates (catalysed by integrase) into the host cell DNA
- New HIV production: Transcription of host DNA now produces more viral RNA and can be used to produce more viruses and as well as viral proteins during translation. Protease assists in the maturation of these new viruses.Â
- Virus release: New viruses are released into the blood by exocytosis

Management considerations
Non-pharmacologicalÂ
- Counselling, disclosing to partner(s) and reducing risky behaviours if any
Pharmacological Baseline investigations to assess treatment eligibilityÂ
- If TB NAAT positive (e.g. GXP+), defer ART 2 – 8 weeks after initiating TB treatment (see local guidelines as it depends on TB drug sensitivity, is neurological vs non-neurological, and based on CD4 count)Â
- If CrAg+, no symptoms or signs of meningitis/LP -ve: Start same day.
- If HepBsAg+, include TDF in treatment regimen Â
- Ensure ALT is normal before initiating treatment. If not, correct the cause.Â
- Ensure a normal eGFR ( >50mL/min in adults) before starting TDF, or consider an alternative NRTI.
Anti-retroviral therapy (ART) = 2 NRTIs + INSTI or NNRTI or PIÂ Â
- Adolescents & adults: 1st line TDF + 3TC + DTG (TLD) → 2nd line TDF + 3TC + LPV/r
- Children: 1st line ABC + 3TC + DTG (ALD) → 2nd line ABC + 3TC + LPV/r
- Renal friendly regimen: ABC + 3TC (renally adjusted dose) + DTG
Second-line ART: Consider changing to a 2nd line regimen if VL >1000 copies/mL. Before changing regimens, make sure that there has been treatment adherence. Non-adherence itself can be a cause of a high VL.Â
Opportunistic infections
- TB Preventive Therapy (TPT) is recommended for PLHIV (people living with HIV), regardless of CD4 count/ Clinical stageÂ
- Cotrimoxazole preventative therapy (CPT) is recommended for:Â
- All infants under 1 year (irrespective of CD4)
- All children 1-5 years with CD4% ≤ 25%, or WHO Stage 3 and 4
- Children over 5 years and adults with CD4 ≤ 200 cells/μL, or WHO Stage 3 or 4
- Â
References
- Dr G Bhanu Prakash Animated Medical Videos. How the HIV Infection Cycle Works – Animated microbiology. YouTube. January 31, 2019. Accessed on July 11, 2024. www.youtube.com/watch?v=GyofqO1TRjUÂ Â
- Gilroy S & Faragon JJ. HIV infection and AIDS. July 8, 2021. Accessed September 9, 2021. https://emedicine.medscape.com/article/211316-overview Â
- National Department of Health (South Africa). 2023 ART Clinical Guidelines for the Management of HIV in Adults, Pregnancy and Breastfeeding, Adolescents. National Department of Health; 2023. https://knowledgehub.health.gov.za/elibrary/2023-art-clinical-guidelines-management-hiv-adults-pregnancy-and-breastfeeding-adolescentsÂ
- HIV and AIDS in South Africa. April 15, 2020. Accessed September 9, 2021. https://www.avert.org/professionals/hiv-around-world/sub-saharan-africa/south-africaÂ
- HIV risk behaviours. December, 2015. Accessed September 9, 2025. https://www.cdc.gov/hiv/risk/estimates/riskbehaviors.html
- Images modified from using Servier Medical Art (https://smart.servier.com/) licensed under a Creative Commons Attribution 3.0 unported license (https://creativecommons.org/licenses/by/3.0/)